torrent_suite虚拟机使用

Torrent Server Virtual Machine
Introduction
This document provides instructions for the following:
Install a virtual machine of the Torrent Server on your own computer
Update Torrent Suite software on the virtual machine
Copy run data from a Torrent Server to the virtual machine
A virtual machine allows you to test the latest version of Torrent Suite software before upgrading your
own system. The VM provides a safe environment for experimentation and allows you to compare results from different software versions.
Use of the virtual machine is limited to testing and experimentation. The virtual machine itself is not a replacement for a Torrent Server for data analysis. Please note that analyses on a virtual machine take longer than on a Torrent Server.
Minimum requirements for a virtual machine
The following are the minimum requirements to run an instance of a Torrent Server virtual machine on your own computer:
64-bit Windows Machine
15 GB hard drive space
1 GB RAM
1 Core
Minimum recommended specifications to run an analysis
The following are the minimum recommend specifications to run an Ion 314™, 316™, or 318™ chip analysis on a virtual machine. The virtual machine is tested with this level of resources. If you increase the resources, your analysis may complete faster. If you decrease the resources, your analysis may fail.
A 64-bit Windows Workstation
500 GB hard drive space
24 GB RAM
8 Cores
Install the Torrent Server virtual machine
Follow these steps to install and run a virtual machine of the Torrent Server on your own computer.
1.Download and install VMWare Player from the VMWare website:
/products/player/
2.Download and unzip the latest version of the Torrent Server image. The
3.0 image is at the
following location on the Ion Community:
Explore Torrent Suite Software 3.0
The zip file contains a fol der called “Torrent Server ver VM”, where ver is the Torrent Server
version.
3.Start VMware Player and click Open a Virtual Machine.
4.Navigate to the unzipped directory and open Torrent_Server_ver_VM. The
Torrent_Server_ver_VM machine appears in the left column:
5.Select the Torrent_Server_ver_VM machine from the left column and click Edit virtual machine
settings in the bottom right.
6. The Virtual Machine Settings screen appears:
Configure the virtual machine with the required memory and click OK. The Virtual Machine Settings screen closes.
7. On the VMWare Player screen, click Play virtual machine:
8. Follow the onscreen directions:
If asked whether you would like to take ownership of the virtual machine, select Yes.
If asked whether you moved or copied the image, select I copied it.
At this point the virtual machine starts to boot, and the Ubuntu startup screen appears.
After the server has booted, you see a blank login screen.
You have successfully installed and booted a Torrent Server virtual machine.
9. Click the screen to interact with the virtual machine session.
Ctrl-Alt is the default key combo to return control to the desktop.
10. Log in as ionadmin / ionadmin and run ifconfig eth0 to find the IP address of this virtual
machine.
The IP address is the number after inet addr:
eth0 Link encap:Ethernet HWaddr 00:25:64:fc:8f:fd
inet addr:172.16.2.10 Bcast:172.16.2.255 Mask:255.255.255.0
inet6 addr: fe80::225:64ff:fefc:8ffd/64 Scope:Link
UP BROADCAST RUNNING MULTICAST MTU:1500 Metric:1
RX packets:526228701 errors:0 dropped:0 overruns:0 frame:0
TX packets:634752939 errors:0 dropped:0 overruns:0 carrier:0
collisions:0 txqueuelen:1000
RX bytes:429470323264 (429.4 GB) TX bytes:728387138079 (728.3 GB)
Interrupt:36 Memory:d6000000-d6012800
11. If eth0 does not exist, run this command:
sudo rm –rf /etc/udev/rules.d/70-persistent-net.rules Then reboot the VM.
The VMware Player asks you to install VM tools. Ignore this request, as these tools are not
necessary.
12. Now you can access Torrent Browser on the virtual machine by typing the IP address of the
virtual machine (see step 11 above to locate the IP address) into your favorite web browser:
You can also SSH into the virtual machine using your favorite SSH client. If you don’t have an SSH client installed, consider using Putty, which is free and easy to use. You can download Putty from this website:
/~sgtatham/putty/download.html For instructions on how to configure Putty, see this page on the Ion Community:
HOWTO: Setup SSH Client on Windows Machine.
13. Use Putty to log into the virtual machine, using the IP address found as shown in Step 11.
To shut down the system, run sudo halt.
Once the system shuts down, you can close VMware Player.
To reboot the system, run sudo reboot.
Update Torrent Server Software on the Virtual Machine
Following these steps to update the Torrent Suite software on the virtual machine:
1. Log into the Torrent Browser on the virtual machine.
2. With to the gear menu in the top right, select Configure.
3. Scroll down to the Database Administration section and select Admin Interface:
If you are prompted to login, use ionadmin / ionadmin.
4. In the admin interface, scroll down to the Management Actions section and click Update Server:
5. In the confirmation window, click OK to proceed.
6. Select View the installation log (refresh to see the progress).
Note: Do not refresh the page until you select the installation log link.
After selecting the installation log link, monitor the progress by refreshing the page.
Copy Data from a Torrent Server to the Virtual Machine
Following these steps to copy data from a Torrent Server to the virtual machine. Before you begin, make sure the virtual machine has SSH access to a Torrent Server with the data you want to transfer.
1. ssh into the virtual machine.
2. Run this command:
scp –r ionadmin@<TSaddress>:/results/<PGMName>/<runName>/results/PGM_test/ Replace the values in brackets with the Torrent Server ip address, instrument name, and run name for the data to be copied.
3. Upload the reference and DNA barcode lists to the virtual machine. See the following document for
additional information:
Torrent Server Administration Guide 3.0
Search for “Reference Tab” and “Manage DNA Barcodes”.
4. In the virtual machine’s Torrent Browser, go to the Data tab and click the Completed Runs &
Results subtab.
5. If you are in the list view, click the Reanalyze button on the right of the run report summary.
If you are in the table view, click the gear menu on the right of the run entry and select the Reanalyze option:
6. Once the analysis is complete, you can manually launch plugins of interest.
If you want to import runs from SFF files, you can use the alternate method found in this page on the Ion Community: Importing Runs from SFF on Your Torrent Server.
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Sept 2012。