基因组信息数据库
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ACEDB
ACEDB
ACEDB( C.elegans 1991 Richard Durbin Jean Thierry-Mieg
C.elegans Durbin Thierry-Mieg ACEDB [3] ” [4 5] ACEDB 1997 [3] 25-30
ACEDB Unix Macintosh OS Windows DNA ,ACEDB ACEDB (throwaway)” ACEDB ACEDB
ACEDB ACEDB ACEDB ACEDB Sanger (Colorado State University) Aedes aegypti Massachusetts General Arabidopsis Walter Eliza Hall (WEHL)
ACEDB Unix X-window World Wide Web Java ACEDB X-window Xace 4,3
LM
MM
RM
ACEDB ACEDB 13.1 Grain Gene Triticeae ACEDB ACEDB w
w .d o c u -t r a c k .c w .d o c u -t r a c k .c o
Reference LM KeySet Reference reference BCG-28-487
13.1
13.1 reference locus iBgl
locus LM reference locus
ACEDB Sydney Bruno
Gaeta [7] Cornell Dave.Matthecos [8]
ACEDB sequence
gene reference 13.2 models.wrm wspec ACEDB [9]
ACEDB [10]
//this shows partial models for the Sequence,
//Locus and Paper class
?Sequence DNA UNIQUE ?DNA UNIQUE Int
Structure Length UNIQUE Int
Properties Pseudogene
CDS
Genomic_canonical
Locus ?Locus XREF Sequence
Paper ?Paper
Remark Text
?Locus Sequence ?Sequence XREF Locus
Paper ?Paper
?paper Title Text
w
w .d o c u -t r a c k .c w .d o c u -t r a c k .c o
13.2 modles.wrm
sequence locus paper information
Structure CDS Paper Int ?Paper
Sequence 13.2 DNA DNA Properities
?Sequence Text Float Date Int length 100 one hundred Paper loci remarks UNIQUE sequence
ACEDB sequence
Paper ?paper
?Paper Sequence Paper Link 13.1 Sequence Paper Paper Sequence XREF cross-reference Sequence XREF
Locus ?Locus XREF Sequence
XREF XREF class ?Locus class-XREFs Int Text Float DateType XREF target tag XREF Locus ?Locus
Sequence seqence
Sequence ?Sequence
Sequence ?Locus XREF Locus
Sequence ?Sequence XREF Locus
// models.wrm // models.wrm
w
w .d o c u -t r a c k .c w .d o c u -t r a c k .c o
ACEDB X-windows [12] sequence paper 13.3
Genomic_Canonical [13]
ACEDB “query be exmple “query builder
13.1 KeySet
Find Sequence ATHFOO1; Follow Locus
Find Sequence AGE>10
Sequence Age
ACEDB TableMaker TableMaker TableMaker [14-16]
Sequence"ATHFOOI"
Length 3879
Remark " a very strange Arabidopsis thaliana DNA."
Locus "FOOI"
Genomic_canonical
Remark " a second remark"
Locus "FOOI"
w
w .d o c u -t r a c k .c w .d o c u -t r a c k .c o
Paper "smith_1997_aahmt"
13.3 ACEDB
ACEDB FTP Unix FTP FAQ [3] 4.3 ACEDB ACEDB [17]
ACEDB
ACEDB Map Clone Gird
Feature Map,Fmap Gene Finder[18] Blixem BLAST[19] [20] DOTTER [21]
Fmap C.elegans
13.4 Schizosaccharomyces
pombe rhp6
1.Locator : a)Zoom In
Zoom Out Whole b) LM c)
MM LM
2.Sequence and ends EM 250728
sequence
3.Summary
4.Scale Origin
5.Genes “Genes” mRNA CDS
6.Features : EMBL GeneBank
7.ATG
GeneFinder
w
w .d o c u -t r a c k .c w .d o c u -t r a c k .c o