KMeyeDB Keio Mutation Database for Eye Disease Genes Constructed on a Graphical Distributed

合集下载

欢迎订阅《中华实验眼科杂志》

欢迎订阅《中华实验眼科杂志》
+ 15 ] Herbort CP , Papadio M , Neri P. Myopia and Syammation + J ] . J Ophthalmic Vis Res,2011,6"4) : 270-283.
+ 16 ] Wei CC, Kung YJ, Chen CS, et al. AHergic conjunctivitis-induced retinal infammation promotes myopia prooression + J ] . EBioMedicine, 2018,28:274-286. DOI: 10. 1016/j. ebiom. 2018. 01. 024.
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中华实验眼科杂志 2021 年 6 月第 39 卷第 6 期 Chin J Exp Ophthalmol,June 2021, Vol. 39,No. 6
学特性改变有关的细胞外基质生化变化被认为是导致
眼轴增长和近视发展的原因。 本研究通过非标记定量液相色谱串联质谱蛋白质
组学分析发现,高度近视患者房水蛋白质组谱发生了
显著变化,并通过了 ELISA实验的验证。生物信息学 分析表明这些差异表达蛋白与免疫和炎症相互作用以
及细胞外基质的重塑密切相关。研究结果为免疫炎症 相互作用和细胞外基质重塑在高度近视中发挥重要作 用提供了新证据,但其具体的作用机制仍有待进一步
研究。本研究的不足之处在于,由于临床样本取材的 限制,无法获得年轻的高度近视患者和正常人的房水
+ 17] Clark SJ, Bishop PN. The eye as a complement dysregulation hotspot + J ] . Semin Immunopathol, 2018,40 " 1 ) : 65 - 74. DOI: 10. 1007/ s00281-017-0649-6-

数据库data base 核心专业词汇+中英对照+解释

数据库data base 核心专业词汇+中英对照+解释

·数据(Data):反映客观世界的事实,并可以区分其特征的符号:字符、数字、文本、声音、图形、图像、图表、图片等,它们是现实世界中客观存在的,可以输入到计算机中进行存储和管理的。

·信息(Information):由原始数据经加工提炼而成的、用于决定行为、计划或具有一定语义的数据称为信息。

·数据库DB(Data Base):是现实世界中相互关联的大量数据及数据间关系的集合。

·数据库管理系统DBMS(Data Base Management System):是对数据库中的数据进行存储和管理的软件系统。

包括存储、管理、检索和控制数据库中数据的各种语言和工具,是一套系统软件。

·数据库系统DBS(Data Base System):是对数据库和数据库管理系统的总称。

是指相互关联的数据集合与操纵数据的软件工具集合。

DBS = DB+DBMS·数据库应用程序接口API(Application Programming Interface):是由DBMS为开发应用程序提供的操纵和访问数据库中数据的接口函数、过程或语言。

·数据库应用程序AP(Application Program):满足某类用户要求的操纵和访问数据库的程序。

·数据仓库(Data Warehouse)一个数据仓库就是一个自带数据库的商业应用系统。

利用现有的数据资源,把数据转换为信息,从中挖掘出知识,提炼成智慧,创造出效益。

·数据发掘(Data Mining)数据发掘可帮助商业用户处理大量存在的数据,以期发现一些"意外的关系",以便增加市场份额和利润。

·信息发掘(Information Mining):信息发掘是指在文档、地图、照片、声音和影像之汪洋大海中发现相关信息,即面向内容的检索。

·数据模式(Data Model):在数据库中,对数据(实体)的描述称为数据库模式。

生物大数据技术中的表型和基因关联分析工具推荐

生物大数据技术中的表型和基因关联分析工具推荐

生物大数据技术中的表型和基因关联分析工具推荐随着生物学研究的深入发展,生物大数据的应用不断增加。

表型和基因关联分析是生物大数据研究中的一个重要内容,它可以帮助我们理解基因与表型之间的关系,从而为疾病的诊断和治疗提供重要依据。

在生物大数据技术中,有许多优秀的表型和基因关联分析工具,以下将推荐几种常用的工具。

第一种工具是Plink。

Plink是一个开源的基因关联分析软件,广泛应用于基因组学研究。

它能够进行常见单核苷酸多态性(SNP)基因关联分析,包括基因频率、遗传模式和表型关联等分析。

Plink具有简单易用的特点,支持多种统计模型,并提供丰富的参数选项。

另外,Plink还提供了一系列的功能,比如数据清洗、质量控制和缺失数据处理等,可帮助研究者更好地处理和分析数据。

第二种工具是Haploview。

Haploview是一个常用的基因型与表型关联分析工具,用于寻找基因型和表型之间的关联。

Haploview可以通过选择合适的人群样本进行基因型测定,并生成基因频率的分布图谱。

同时,Haploview还可以进行单个SNP的关联分析和基因区块的关联分析,并通过生成图形展示结果。

Haploview的优点在于其丰富的分析工具和直观的结果展示方式,帮助研究者更好地理解基因型和表型之间的关系。

第三种工具是GWAS Catalog。

GWAS Catalog是一个全球性的基因组关联研究目录,收集整理了世界各地的GWAS研究结果。

它包含了大量的基因与表型相关的关联数据,并提供了数据搜索和浏览的功能。

GWAS Catalog不仅提供关联分析的结果,还提供了相关文献和背景知识的链接,帮助研究者更好地理解研究结果。

通过使用GWAS Catalog,研究者可以快速查找特定基因与表型关联的研究结果,为生物大数据的分析提供重要参考。

除了上述推荐的工具外,还有其他一些生物大数据技术中的表型和基因关联分析工具。

例如,Hail是一个用于基因组学数据处理和分析的开源软件,可以进行基因型和表型的关联分析、基因型调整和多倍体分析等。

维生素D与自身免疫性甲状腺疾病的研究进展

维生素D与自身免疫性甲状腺疾病的研究进展

- 182 -①济宁医学院临床医学院 山东 济宁 272067②山东省济宁市第一人民医院通信作者:樊琳琳维生素D与自身免疫性甲状腺疾病的研究进展宋静静① 樊琳琳② 【摘要】 维生素D 缺乏普遍存在于人群中,维生素D 的经典作用与骨骼、肾脏和肠道有关。

近年来研究发现,维生素D 还与免疫、生殖、内分泌、肌肉及大脑、皮肤和肝脏相关。

维生素D 与自身免疫性甲状腺疾病(autoimmune thyroid disease,AITD)之间的关系也被广泛研究,但只有少数在人类中进行的随机临床试验研究了维生素D 在预防或治疗免疫性疾病中的可能作用。

本文的目的是回顾最近维生素D 与AITD 之间的文献,分析其可能存在的机制,以及补充维生素D 在AITD 中的潜在意义。

【关键词】 维生素D 自身免疫性甲状腺疾病 桥本甲状腺炎 格雷夫斯病 格雷夫斯眼病 Research Progress of Vitamin D and Autoimmune Thyroid Disease/SONG Jingjing, FAN Linlin. //Medical Innovation of China, 2023, 20(35): 182-188 [Abstract] Vitamin D deficiency is common in humans, and the classic effects of vitamin D are related to the bones, kidneys and intestines. In recent years, studies had found that vitamin D is also associated with immunity, reproduction, endocrine, muscle, brain, skin and liver. The relationship between vitamin D and autoimmune thyroid disease (AITD) has also been extensively studied, but only a handful of randomized clinical trials in humans have investigated the possible role of vitamin D in the prevention or treatment of immune diseases. The aim of this article was to review the recent literature on vitamin D and AITD, to analyze its possible mechanisms, and supplement the potential significance of vitamin D in AITD. [Key words] Vitamin D Autoimmune thyroid disease Hashimoto thyroiditis Graves disease Graves' ophthalmopathy First-author's address: Clinical Medical College of Jining Medical University, Jining 272067, China doi:10.3969/j.issn.1674-4985.2023.35.041 自身免疫性甲状腺疾病(autoimmune thyroid disease,AITD)是一组器官特异性自身免疫性疾病,以产生自身甲状腺抗体和淋巴细胞浸润甲状腺为特征。

Mesh 医学主题词表

Mesh 医学主题词表

树状结构表的大类和子类目表 A Anatomy (解剖)A1 Body Regions (身体各部位)A2 Musculoskeletal System (肌肉骨骼系统)A3 Digestive System (消化系统)A4 Respiratory System (呼吸系统)A5 Urogenital System (泌尿系统)A6 Endocrine System (内分泌系统)A7 Carrdiovascular System (心血管系统)A8 Nervous System (神经系统)A9 Sense Organs (感觉器官)\A10 Tissues (组织)A11 Cells (细胞)A12 Fluids and Secretions (体液和分泌物)A13 Animal Structures (动物结构)A14 Stomatognathic System (口颌系统)A15 Hemic and Immune Systems (血液和免疫系统)A16 Embryonic Structures (胚胎结构)B Organisms (有机体)B1 Invertebrates (无脊椎动物)B2 Vertebrates (脊椎动物)}B3 Bacteria (细菌)B4 Viruses (病毒)B5 Algae and Fungi (藻类和真菌)B6 Plants (植物)B7 Archaea (古(原)生物)C Diseases (疾病)C1 Bacterial Infections&Mycoses (细菌感染和真菌病)C2 Virus Diseases (病毒疾病)C3 Parasitic Diseases (寄生虫病)C4 Neoplasms (肿瘤)!C5 Musculoskeletal Diseases (肌肉骨骼系统疾病)C6 Digestive System Diseases (消化系统疾病)C7 Stomatognathic Diseases (口颌疾病)C8 Respiratory Tract Diseases (呼吸道疾病)C9 Otorhinolaryngologic Diseases (耳鼻喉疾病)C10 Nervous System Diseases (神经系统疾病)C11 Eye Diseases (眼疾病)C12 Urologic and Male Genital Diseases (泌尿和男性生殖器疾病)C13 Female Genital Diseases and Pregnancy Complications (女性生殖器疾病和妊娠并发症)C14 Cardiovascular Diseases (心血管系统疾病)《C15 Hemic and Lymphatic Diseases (血液和淋巴系统疾病)C16 Neonatal Diseases and Abnormalities (新生儿疾病和畸形)C17 Skin and Connective Tissue Diseases (皮肤和结缔组织疾病)C18 Nutritional and Metabolic Diseases (营养和代谢性疾病)C19 Endocrine Diseases (内分泌疾病)C20 Immunologic Diseases (免疫性疾病)C21 Injuries,Poisonings,Occupational Diseases (损伤,中毒,职业病)C22 Animal Diseases (动物疾病)C23 Symptoms and General Pathology (症状和普通病理学名称)D Chemicals and Drugs (化学品和药物)%D1 Inorganic Chemicals (无机化合物)D2 Organic Chemicals (有机化合物)D3 Heterocyclic Compounds (杂环化合物)D4 Polycyclic Hydrocarbons (多环碳氢化合物)D5 Enviromental Pollutants,Noxae andPesticides(环境污染物,病原农药和杀虫剂)D6 Hormones,Hormone Substitutes,and Hormone Antgrists (激素、激素代用品和激素拮抗剂)D7 Repreductive Control Agents (避孕药)D8 Enzymes,Coenzymes&Enzyme Inhibitors (酶、辅酶和酶抑制剂)D9 Carbohydrates and Hypoglycemic Agents (碳水化合物和降糖剂):D10 Iipids and Antilipemic Agents (脂类和抗血脂药)D11 Growth Substances,Pigments&Vitamins (促生长物质、色素和维生素)D12 Amino Acids,Peptides and Proteins (氨基酸、肽、蛋白)D13 Nuclid Acids,Nucleotides and Nucleosides (核酸,核苷类和核苷酸类)D14 Neurotransmitters and Neurotransmitter Agents (神经递质和神经递质药物)D15 Central Nervous System Agents (中枢神经系统药物)D16 Peripheral Nervous System Agents (周围神经系统药物)D17 Anti- Inflammatory Agents,Antirheu-`matic Agents,and Inflammation Mediators (抗炎药,抗风湿药,炎性介质)】D18 Cardiovascular Agents (心血管系统药物)D19 Hematologic,Gastric,Renal Agents (血液、胃和肾脏药物)D20 Anti-Infective Agents (抗感染药物)D21 Anti-Allergic and Respiratory System Agents (抗变态反应和呼吸系统药物)D22 Antineoplastic and Immunosuppressive Agents (抗肿瘤药和免疫抑制剂)D23 Dermatologic Agents (皮肤病药物)D24 Immunologic and Biologic Factors (免疫和生物因子)D25 Biomedical and Dental Materials (生物医学和牙科材料)D26 Miscellaneous Drugs and Agents (其他药品及制剂)E Analytical,Diagnostic and Therapeutic Techniques and Equipment (分析、诊断、治疗技术和设备)#E1 Diagnosis (诊断)E2 Therapeutics (治疗)E3 Anesthesia and Analgesia (麻醉和镇痛)E4 Surgical,procedures,Operative (外科,操作,手术)E5 Investigative Techniques (包埋技术)E6 Dentistry (牙科)E7 Equipment and Supplies (设备和供应)F Psychiatry and Psychology (精神病学和心理学)F1 Behavior and Behavior Mechanisms (行为和行为机制)F2 Psychological Phenomena and processes (心理现象和过程)…F3 Mental Disorders (精神疾病)F4 Behavioral Disciplines and Activities (行为训练和活动)G Biological Sciences (生物科学)G1 Biological Sciences (生物科学)G2 Health Occupations (保健事业)G3 Environment and Public Health (环境和公共卫生)G4 Biological Phenomena,Cell Physiology &Immunity (生物现象、细胞现象和免疫)G5 Genetics (遗传学)G6 Biochemical Phenomena,Metabolism&Nutrition (生物化学现象、代谢和营养)G7 Physiogical processes (生理过程)@G8 Reproductive &Urinary Physiology (生殖和泌尿生理)G9 Circulatory &Respiratory Physiology (循环和呼吸生理)G10 Digestive,Oral &Skin Physiolgy (消化、口腔和皮肤生理)G11 Musculoskeletal,Neural &Ocular Physilogy (肌肉骨胳、神经和视生理)G12 Chemical,Pharmacologic Phenomena (化学和药理现象)H Physical Sciences (自然科学)I Anthropology,Education,Sociology and Social Phenomena(人类学、教育、社会学和社会现象)I1 Social Sciences (社会科学)I2 Education (教育)I3 Human Activities (人类活动)*J Technology,Industry,Agriculture (工艺学、工业、农业)J1 Technology,Industry &Agriculture (工艺学,工业和农业)J2 Food &Beverages (食物和饮料)K Humanities (人文科学)L Information science (情报科学)M Persons (人群)N Health Care (卫生保健)N1 Population Characteristics (人口特征)N2 Health Care Facilities,Manpower and Services (卫生保健设施、人力和服务)!N3 Health Care Economics&Organization (卫生保健经济和组织)N4 Health Services Administration (卫生服务行政管理)N5 Health Care Quality,Access,Evaluation (卫生保健质量,实施,评估)Z Geographicals (地理)2.美国《医学主题词表》简介(1)概况《医学主题词表》(Medical Subject Headings,简称MeSH),由美国国立医学图书馆(NLM)编辑出版,1960年第一版。

和血明目片联合羟苯磺酸钙片治疗早期糖尿病视网膜病变的临床效果研讨

和血明目片联合羟苯磺酸钙片治疗早期糖尿病视网膜病变的临床效果研讨

2023年12月第9卷第12期和血明目片联合羟苯磺酸钙片治疗早期糖尿病视网膜病变的临床效果研讨王安琪王安琪,,翁朝龙翁朝龙,,吴苏名无锡市第二人民医院眼科,江苏无锡214000摘要目的探讨和血明目片联合羟苯磺酸钙片治疗早期糖尿病视网膜病变的临床效果。

方法方便选取2020年5月—2023年5月无锡市第二人民医院收治的115例早期糖尿病视网膜病变患者为研究对象;依据投掷硬币法分为参照组和研究组。

参照组(57例)采用羟苯磺酸钙片治疗;研究组(58例)在参照组基础上,给予和血明目片治疗;比较两组的用药总有效率、眼底检查指标。

结果研究组总有效率(98.28%)高于参照组(85.96%),差异有统计学意义(χ2=6.040,P<0.05);治疗后,研究组眼底检查指标结果、血糖指标水平优于参照组,差异有统计学意义(P均<0.05)。

结论和血明目片联合羟苯磺酸钙片治疗早期糖尿病视网膜病变,可以提升疗效、改善眼底检查指标以及血糖水平。

关键词和血明目片;羟苯磺酸钙片;早期糖尿病视网膜病变中图分类号R587587..2文献标志码A doi10.11966/j.issn.2095-994X.2023.09.12.36Study on the Clinical Effect of Hexue Mingmu Tablets Combined with Calcium Do⁃besilate Tablets in the Treatment of Early Diabetic RetinopathyWANG Anqi, WENG Chaolong, WU SumingDepartment of Ophthalmology, Wuxi Second People's Hospital, Wuxi, Jiangsu Province, 214000 ChinaAbstract Objective To explore the clinical effect of Hexue Mingmu Tablets combined with calcium dobesilate tablets in the treatment of early diabetic retinopathy. Methods 115 patients with early diabetic retinopathy in Wuxi Second People's Hospital from May 2020 to May 2023 were conveniently selected as the study subjects, they were divided into reference group and study group based on the coin tossing method. The reference group (57 cases) was treated with calcium dobesilate tablets, and the study group (58 cases) was treated with Hexue Mingmu tablets on the basis of the reference group. The total effective rate of medication and fundus examination indexes of the two groups were com⁃pared. Results The total effective rate of in the study group (98.28%) was higher than that of the reference group (85.96%), and the difference was statistically significant (χ2=6.040, P<0.05). After treatment, the results of the series of fundus examination indexes and the level of blood glucose indexes of the reference group were better than those in the reference group, and the differences were statistically significant (all P< 0.05). Conclusion Hexue Mingmu Tablets combined with calcium dobesilate tablets to treat early diabetic retinopathy, it can improve the effi⁃cacy, improve the fundus examination index and blood glucose level.Key words Hexue Mingmu Tablets; Calcium dobesilate tablets; Early diabetic retinopathy近年来,糖尿病视网膜病变发生率明显增加。

《中西医结合护理》2023年9卷7期封面-目录页-封底

《中西医结合护理》2023年9卷7期封面-目录页-封底

目 次2023 年 7 月 第 9 卷 第 7 期中西医结合脑病护理专栏爱脑护脑,中西医结合护理促健康——“中西医结合脑病护理”专栏第二期导读…………………………………………………………………廖若夷(1)基于“一气周流”理论刮痧干预高血压缺血性脑卒中的疗效观察………刘彬,余艳兰,高子琪,奉水华,杨楠,郭元,廖若夷(2)脐灸联合间歇性导尿在中风后神经源性膀胱患者康复护理中的应用………………………………………邹秋玉,罗红,余艳兰,许静(8)穴位贴敷治疗脑卒中后吞咽障碍的Meta 分析…………………佀惠婕,廖若夷,余艳兰,高子琪,刘彬,郭元(13)基于CiteSpace 的脑卒中后睡眠障碍中医护理研究可视化分析…………………高子琪,廖若夷,余艳兰,佀惠婕,刘彬,郭元(23)经穴推拿联合脐灸治疗1例气虚便秘患者的中医护理体会…………………………………………………葛思楠,王雪送,余艳兰(30)子午流注择时气交灸联合五行音乐治疗1例出血性中风气虚血瘀型患者泄泻的护理体会…………………雷啸阳,陈青,许时来,张占伟,张茜,邓海霞(34)耳穴压豆联合手指点穴干预1例心肾不交型失眠患者的护理体会……………………………………………………………张慧,周运波(38)1 例神经源性膀胱患者的中西医结合护理体会…………………………………………………郑莹芊,许静,邹秋玉(41)1例中风后遗症期痰热瘀结证反复发热患者的中医外治护理体会…………………………………………………罗焕文,周运波,刘才丹(45)1例急性脑梗死并发下消化道出血患者的护理体会……………………………………………………………陈海香,吴敏(49)心理辅导护理联合中医特色疗法治疗丛集性头痛1例的护理体会………………………………………刘才丹,余艳兰,周运波,罗焕文(54)中风重症患者中西医早期康复及影响因素研究进展……………………………………………………………罗红,余艳兰(58)中医护理技术在脑卒中后便秘中的应用进展……………………………张茜,陈偶英,许时来,张占伟,雷啸阳(65)脑卒中后认知障碍的中医特色护理研究进展………………………………………李文雅,肖纯,黄璐,彭晓玲(71)我国中医脑病专科护士培养构思与展望………………………………………梁星星,李欢,邓茜,黄璐(78)中西医结合老年慢病护理及管理专栏聚焦中西医多元融合,构建老年慢病管理创新模式——“中西医结合老年慢病护理及管理”专栏第二期导读………………………………………………………………………杨梅(82)ZHONGXIYI JIEHE HULI主管北京市中医管理局主办中华中西医结合护理学会北京市中医护理能力提升工程办公室编辑《中西医结合护理》编辑部主编 唐 玲主任 黄 磊编辑 尹佳杰 吴银平编辑助理 鄂海燕美术编辑 王 丽地址 南京市龙蟠路155号 联合立方广场3⁃203邮编 210037电话 ************邮箱 bjb@出版中西医结合护理杂志社社长 叶振华电话 ************网刊http ://邮箱 tg@学术传播结合护理(南京)有限公司本刊刊出所有文章不代表编委会以及编辑部的观点ZHONGXIYI JIEHE HULI2023 年 7 月第 9 卷第 7 期新形势下老年慢病管理发展趋势的思考…………………………………………………………………………………………………………杨梅(84)中药塌渍治疗联合超声药物导入治疗老年糖尿病周围神经病变的效果观察……………………………………………………………………………………张圆林,蔡伟伟,李娜(90)变应性鼻炎患者中西医结合护理效果观察……………………………………………………………………………………索翠红,杨梅,刘云霞(95)认知障碍评估对老年2型糖尿病患者低血糖发生率的影响…………………………………………………………………………………………………………刘云霞(100)高龄患者经外周静脉置入中心静脉导管时送管困难影响因素及对策…………………………………………………………………………………………………………何英(105)中医护理联合持续雾化吸入在老年气管切开患者护理中的应用效果观察…………………………………………………………………………………………………………黄宁(110)中医护理在老年晚期恶性肿瘤患者中的应用效果观察…………………………………………………………………………………………………………姜珊(114)中医特色护理技术联合健康教育对老年肿瘤患者化疗期间胃肠道反应的影响…………………………………………………………………………………………………………李芳(119)集束化护理预防老年失禁相关性皮炎效果观察……………………………………………………………………………………刘玉辉,张亚萍,郑志兰(123)163例肝病患者抑郁状况调查及护理干预效果分析…………………………………………………………………………望运丹,王伟仙,胡德英,刘义兰(126)中药超声药物透入治疗1例不完全性肠梗阻的护理体会…………………………………………………………………………………………………………刘旭(133)1例尿毒症继发甲状旁腺功能亢进行甲状旁腺全切联合自体前臂移植术的围手术期护理体会…………………………………………………………………………………………………………谢继红(137)1例慢性肾衰竭患者连续性肾脏替代治疗及护理体会………………………………………………………………………………………………许娟,王亚茹(141)耳穴压豆治疗戒烟后失眠1例护理体会…………………………………………曹蕾,孔晓春,刘洋,杨婷,张丽君,鄂海燕,唐玲(144)耳穴压丸治疗1例糖尿病合并肺炎患者的护理体会…………………………………………………………………………………………………………韩精华(147)发热患者分诊系统在新型冠状病毒肺炎急诊预检分诊中的应用效果…………………………………………………………………………………………………………陈曦(150)老年腹腔镜结肠癌术中低体温的影响因素及护理措施研究进展…………………………………………………………………………………………………………朱月华(154)中医穴位贴敷疗法在成人便秘中的应用研究进展……………………………………………………王晓敏,郑乃花,杨冬梅,鄂海燕,张丽君,刘晓柳(158)老年脑卒中患者跌倒原因分析与护理对策研究进展………………………………………………………………………………………………马翠卿,杨梅(164)论著脊柱外科术后患者疼痛管理的证据总结………………………………………向婷婷,郑苏,谢晓敏(170)ZHONGXIYI JIEHE HULI2023 年 7 月第 9 卷第 7 期妊娠期糖尿病产妇出院准备度现状及影响因素研究……………………………………………………………………………………段美美,孙贵豫,黎媛媛(176)肺癌患者化疗期间饮食困扰的质性研究………………………………………………………………………………………………张月瑜,尹媛媛(182)中医特色护理砭石熨摩疗法缓解1例腰椎管狭窄术后患者腹胀的护理体会…………………………………………………………………………………………………………张旭(188)1例肝肿物微创术后并发流注的护理体会…………………………………………………………………………………………………………冯瑞萍(191)技术与方法1例双上腔静脉患者Sherlock 3CG尖端定位下经外周静脉穿刺中心静脉置管及护理对策………………………………………………………………宋兰娜,王媛,王文萱,王钰,张娜(195)1例持续性房颤伴急性左心衰患者腔内心电图定位下PICC置管的护理………………………………………………………………………………………………廖丽红,施丽华(201)俯卧位通气技术在ICU的应用及护理…………………………………………………………………………代洪然,王华枝,李玉华,马海红(205)全科护理经鼻肠管营养支持联合快速康复外科理念对重症颅脑损伤患者营养状况、并发症及术后恢复的影响…………………………………………………………………………………………………………卢卉欣(209)盆底肌锻炼联合水疗促进直肠癌患者保肛术后康复效果研究………………………………………………………………………………………………黄丽明,吴丽芳(215)护理管理科室设立总护士岗位在新入职护士值班管理中的应用…………………………………………………………………………贺丹丹,朱恒美,杨露,倪媛(219)危机管理在儿童口腔门诊投诉管理中的应用……………………………………………………………………………………周莉娜,罗莎,王雁(224)案例分享1例甲型H1N1流感病毒合并高黏液型肺炎克雷伯菌感染患者俯卧位通气的护理体会………………………………………………………………魏娴,王慧萍,刘璐,李祯,张智舒(229)依奇珠单抗联合血液灌流治疗重度银屑病1例疗效观察……………………………………………………………………………………李静,沈霞,李红仙(234)1例急性心肌梗死后并发室性心律失常电风暴患者的急救护理…………………………………………………………………………………………………………汪碧云(237)综述多发性骨髓瘤并发周围神经病变患者的护理研究进展………………………………………………………………李丽霞,班锦青,梁静林,农珍诊,韦玲(241)Volume 9 Number 7 July 2023Fostering brain health with integrated traditional Chinese and western medi⁃cine nursing ……………………………………………LIAO Ruoyi (1)Effect of scraping on hypertensive ischemic stroke based on " Qi Circula⁃tion" theory ……………………LIU Bin , YU Yanlan , GAO Ziqi , FENG Shuihua , YANG Nan , GUO Yuan , LIAORuoyi (2)Application of umbilical moxibustion combined with intermittent catheter⁃ization in rehabilitation nursing of patients with neurogenic bladder af⁃ter stroke …………ZOU Qiuyu , LUO Hong , YU Yanlan , XU Jing (8)A Meta -analysis of acupoint application in the treatment of dysphagia after stroke ……………………………………SI Huijie , LIAO Ruoyi , YU Yanlan , GAO Ziqi , LIU Bin , GUO Yuan (13)Visual analysis of traditional Chinese medicine nursing research on post -stroke sleep disorders based on CiteSpace …………………………………GAO Ziqi , LIAO Ruoyi , YU Yanlan , SI Huijie , LIU Bin , GUO Yuan (23)Traditional Chinese medicine nursing of a patient with Qi -deficiency type constipation treated by meridian acupoints massage combined with um⁃bilical moxibustion ……GE Sinan , WANG Xuesong , YU Yanlan (30)Qijiao moxibustion based on midnight -noon ebb -flow combined with five -element music therapy and nursing management of diarrhea in a patient with hemorrhagic stroke of Qi -deficiency and blood stasis syndrome …………LEI Xiaoyang , CHEN Qing , XU Shilai , ZHANG Zhanwei , ZHANG Qian , DENG Haixia (34)Nursing of a patient with insomnia of heart -kidney disharmony treated by auricular acupoint pressing and acupoint finger -pressing therapy ………………………………………ZHANG Hui , ZHOU Yunbo (38)Nursing of integrated traditional Chinese and western medicine for a patient with neurogenic bladder ………………………ZHENG Yingqian , XU Jing , ZOU Qiuyu (41)Traditional Chinese Medicine external treatment and nursing for a patient with recurrent fever in the sequelae of stroke with phlegm -heat stasis syndrome …………LUO Huanwen , ZHOU Yunbo , LIU Caidan (45)Nursing of a patient with acute cerebral infarction combined with lower gas⁃trointestinal tract bleeding ……………CHEN Haixiang , WU Min (49)Psychological counseling and nursing interventions with Traditional Chi⁃nese Medicine characteristics for a patient with cluster headache………LIU Caidan , YU Yanlan , ZHOU Yunbo , LUO Huanwen (54)Research progress of Traditional Chinese and Western medicine early reha⁃bilitation and its influencing factors in severe stroke patients…………………………………………LUO Hong , YU Yanlan (58)Contents Responsible InstitutionBeijing Administration of Tradi⁃tional Chinese Medicine SponsorAssociation o f I ntegrative N ursingBeijing Traditional Chinese Med⁃icine Nursing Competence Im⁃provement Project OfficeEiditingEditorial Board of Chinese Jour⁃nal of Integrative Nursing Editor-in-ChiefTANG Ling DirectorHUANG Lei EditorsYIN Jiajie WU Yinping Editorial Assistant E Haiyan Art Editor WANG Li Address NO.155, Longpan Road ,Nanjing , China Post Code 210037Tel + 86 - 25 - 85552880E⁃mail : bjb@PublisherIntegrative Nursing Press Founder and CEO YE Zhenhua Tel + 86 - 25 - 85630967Online Publishinghttp : / / E⁃mail : tg@Academic DisseminationIntegrative Nursing (Nanjing )Co.,LtdVolume 9Number 7July 2023Application progress of Traditional Chinese Medicine nursing technology in constipation after stroke ……………………………ZHANG Xi, CHEN Ouying, XU Shilai, ZHANG Zhanwei, LEI Xiaoyang (65)Progress of research on Traditional Chinese Medicine characteristic nursing of patients with cognitive impair⁃ment after stroke………………………………LI Wenya, XIAO Chun, HUANG Lu, PENG Xiaoling (71)Conception and prospect of talent training of Traditional Chinese Medicine encephalopathy nurse specialists …………………………………………………LIANG Xingxing, LI Huan, DENG Qian, HUANG Lu (78)Focusing on the integrated traditional Chinese and western medicine and building an innovative management model for chronic diseases in the elderly……………………………………………………YANG Mei (82)On the thinking of development trend of chronic disease management in the elderly……………YANG Mei (84)Effect of Traditional Chinese Medicine collapse stains combined with ultrasound drug penetration therapy in the treatment of diabetic peripheral neuropathy in the elderly………ZHANG Yuanlin, CAI Weiwei, LI Na (90)Effect of integrated traditional Chinese and western medicine in nursing of patients with allergic rhinitis …………………………………………………………………SUO Cuihong, YANG Mei, LIU Yunxia (95)Effect of cognitive impairment assessment on the incidence of hypoglycemia in hospitalized elderly patients with type 2 diabetes mellitus……………………………………………………………………LIU Yunxia (100)Influential factors and countermeasures of the difficulty in inserting peripheral inserted central venous catheter among elderly patients…………………………………………………………………………HE Ying (105)Effect of Traditional Chinese Medicine nursing combined with continuous nebulization in nursing of elderly pa⁃tients undergoing tracheostomy…………………………………………………………HUANG Ning (110)Application of Traditional Chinese Medicine nursing technology for elderly patients with advanced cancer ……………………………………………………………………………………………JIANG Shan (114)Effect of Traditional Chinese Medicine characteristic nursing technology combined with health education on gas⁃trointestinal adverse reactions during chemotherapy in elderly patients with cancer…………LI Fang (119)Effect of care bundles on the prevention of incontinence-associated dermatitis in the elderly…………………………………………………………LIU Yuhui, ZHANG Yaping, ZHENG Zhilan (123)Analysis of depression status and nursing interventions in 163 patients with liver disease……………………………………………WANG Yundan, WANG Weixian, HU Deying, LIU Yilan (126)Nursing of a patient with incomplete intestinal obstruction treated by the ultrasound-enhanced penetration of Tra⁃ditional Chinese Medicine………………………………………………………………………LIU Xu (133)Perioperative nursing of a patient undergoing total parathyroidectomy with subcutaneous autotransplantation for secondary hyperparathyroidism……………………………………………………………XIE Jihong (137)Nursing of a patient undergoing continuous renal replacement therapy for chronic renal failure …………………………………………………………………………………XU Juan, WANG Yaru (141)Auricular acupoint pressing therapy and nursing of a patient with insomnia after quitting smoking ……………………CAO Lei, KONG Xiaochun, LIU Yang, ZHANG Lijun, E Haiyan, TANG Ling (144)Auricular acupoint pressing and nursing of a patient with pneumonia and diabetes mellitus…HAN Jinghua (147)Application of fever triage system in emergency pre-examination and triage of COVID-19 patients ………………………………………………………………………………………………CHEN Xi (150)Influencing factors and nursing countermeasures of hypothermia in elder patients undergoing laparoscopic resec⁃tion of colon cancer………………………………………………………………………ZHU Yuehua (154)Review on the application of acupoint sticking therapy for constipation in adult patients………WANG Xiaomin, ZHENG Naihua, YANG Dongmei, E Haiyan, ZHANG Lijun, LIU Xiaoliu (158)Research progress on causes and nursing countermeasures of falls in elderly stroke patientsVolume 9Number 7July 2023………………………………………………………………………………MA Cuiqing, YANG Mei (164)An Evidence summary of postoperative pain management in spinal surgery…………………………………………………………XIANG Tingting, ZHENG Su, XIE Xiaomin (170)Discharge readiness and its influencing factors among pregnant women with gestational diabetes mellitus ……………………………………………………………DUAN Meimei, SUN Guiyu, LI Yuanyuan (176)A qualitative study on dietary distress of lung cancer patients during chemotherapy…………………………………………………………………………ZHANG Yueyu, YIN Yuanyuan (182)Application of stone needle ironing therapy in a patient with abdominal distension after surgery for lumbar spinal stenosis……………………………………………………………………………………ZHANG Xu (188)Nursing of a patient with deep muscle abscess after minimally invasive surgery for hepatic masses …………………………………………………………………………………………FENG Ruiping (191)Sherlock 3CGtip confirmation system for placement of peripherally inserted central catheters and related nursing countermeasures in a patient with double superior vena cava……………………………SONG Lanna, WANG Yuan, WANG Wenxuan, WANG Yu, ZHANG Na (195)Intracavitary electrocardiography for peripherally inserted central catheters tip location and nursing for a patient with persistent atrial fibrillation and acute left heart failure…………………LIAO Lihong, SHI Lihua (201)Application and nursing of prone ventilation technique in ICU………………………………………………DAI Hongran, WANG Huazhi, LI Yuhua, MA Haihong (205)Influence of enteral nutrition support via nasointestinal tube combined with fast-truck surgery on nutritional sta⁃tus, complications and postoperative rehabilitation of patients with severe head injury……LU Huixin (209)Effect of pelvic floor muscle training combined with hydrotherapy on postoperative rehabilitation of patients un⁃dergoing for sphincter preservation rectal cancer………………………HUANG Liming, WU Lifang (215)Establishment of chief nurse position in training and duty management of newly recruited nurses ……………………………………………………HE Dandan, ZHU Hengmei, YANG Lu, NI Yuan (219)Application of crisis management in patient complaint management in the pediatric dentistry clinic ……………………………………………………………………ZHOU Lina, LUO Sha, WANG Yan (224)Prone position ventilation and nursing management for a patient with influenza A (H1N1)virus infection com⁃bined with hypermucoviscous Klebsiella pneumoniae infection………………………………………WEI Xian, WANG Huiping, LIU Lu, LI Zhen, ZHANG Zhishu (229)Therapeutic effect of Ixekizumab combined with hemoperfusion in a patient with severe psoriasis ………………………………………………………………………LI Jing, SHEN Xia, LI Hongxian (234)Emergency care of a patient with ventricular arrhythmiastorms following acute myocardial infarction ……………………………………………………………………………………………WANG Biyun (237)Research progress in nursing of multiple myeloma complicated by peripheral neuropathy………………………………LI Lixia, BAN Jinchun, LIANG Jinglin, NONG Zhenzhen, WEI Ling (241)。

生物大数据技术中的基因甲基化分析工具推荐

生物大数据技术中的基因甲基化分析工具推荐

生物大数据技术中的基因甲基化分析工具推荐生物大数据的快速发展为研究者们提供了大量的生物学信息,其中基因组数据是最重要的一部分。

基因甲基化是一种常见的DNA化学修饰,在基因调控和表观遗传学中发挥着重要的作用。

随着技术的进步和数据量的增大,研究者们需要有效的工具来分析和解释基因甲基化数据。

由于基因甲基化数据的高维度和复杂性,寻找合适的分析工具是一个关键的任务。

以下是几种常用的基因甲基化分析工具,它们在生物大数据技术中扮演着重要的角色:1. BismarkBismark是一个基因甲基化数据分析工具,可用于对双链DNA测序数据进行甲基化修饰的鉴定和定量。

它能够将原始测序数据与参考基因组比对,识别甲基化位点并计算甲基化水平。

Bismark具有高效和准确的特点,可应用于基因组广泛的甲基化研究。

2. DMRfinderDMRfinder是一个用于鉴定和定量甲基化差异区域(DMR)的工具。

DMR是指在不同条件下DNA甲基化水平显著改变的区域,对于理解基因调控和表观遗传学的变化具有重要意义。

DMRfinder通过计算甲基化差异的统计学显著性来确定DMR,并提供可视化探索结果的功能。

3. methylKitmethylKit是一个用于甲基化数据分析的R包,提供了广泛的功能来处理和分析基因甲基化数据。

它支持从原始测序数据到鉴定甲基化位点、计算甲基化水平、寻找DMR等多个分析步骤。

methylKit具有高度灵活性和可定制性,适用于各种规模和类型的甲基化研究。

4. GREATGREAT(Genomic Regions Enrichment of Annotations Tool)是一个用于基因功能注释和富集分析的工具。

它通过比较基因组中的甲基化特征和功能注释数据,识别与特定基因集关联的生物学过程、疾病和分子功能等信息。

GREAT提供了直观的可视化界面和多种统计方法,帮助研究者深入理解基因甲基化数据的生物学意义。

5. MethylSigMethylSig是一个用于检测甲基化数据中显著富集的甲基化位点的工具。

Circuit-specific_gene_therapy_is_knocking_on_the_d

Circuit-specific_gene_therapy_is_knocking_on_the_d

Circuit-specific gene therapy is knocking on the door of Parkinson’s diseaseParkinson’s disease (PD) is a prevalent neurodegenerative disorder that affects millions of individuals worldwide.Symptoms of PD typically manifest as movement impairments,including bradykinesia, rigidity, tremors, and postural instability, as well as non-motor symptoms, such as cognitive decline, pain, and depression (Bloem et al., 2021). The fundamental neuropathological hallmarks of PD include the degeneration of dopaminergic neurons in the substantia nigra (SN) and the aggregation of α-synuclein in intracellular inclusions. At present, the primary interventions for PD treatment are levodopa, dopamine agonists, deep brain stimulation (DBS), and physical therapy. However, levodopa administration can lead to intractable side effects such as dyskinesia (Wang & Shih, 2023) and DBS poses risks of long-term psychiatric complications, including chronic depression and personality alterations, as well as infection related to the intracranial electrodes (Volkmann et al., 2010). Consequently,there exists an urgent need for the innovation of targeted and efficacious treatments for PD.Chen et al. (2023) recently documented the development and verification of a novel gene therapy for PD, which successfully reversed the core motor symptoms of PD in both mouse and monkey models (Figure 1). Their research specifically targeted D1 medium spiny neurons (D1-MSNs) in the striatum, which project to the globus pallidus internal segment (GPi) and substantia nigra pars reticulata (SNr), thus forming a direct pathway. D2 medium spiny neurons (D2-MSNs), another important neuronal type in the striatum,project indirectly to the SNr via the globus pallidus external segment (GPe)/subthalamic nucleus (STN), thus forming an indirect pathway. Activation of the direct pathway (comparable to an “accelerator”) facilitates movement, whereas activation of the indirect pathway (comparable to a “brake”) inhibits movement. In PD, degeneration of dopaminergic neurons in the substantia nigra pars compacta (SNc) weakens dopaminergic modulation of both D1-MSNs and D2-MSNs. As a result, the direct pathway is repressed while the indirect pathway is enhanced, causing an imbalance between the “accelerator” and “brake”, resulting in motor deficits.Therefore, the study aimed to up-regulate the activity of D1-MSNs associated with the direct pathway and thereby restore movement control equilibrium in PD (Chen et al., 2023).To achieve this objective, a method to precisely manipulatespecific cell types within D1-MSNs is required. Thus, the authors utilized cell type-specific expression by employing a tailored retrograde adeno-associated virus (AAV) with a unique promoter to drive elevated gene expression in D1-MSNs, the only major cell type in the striatum projecting to the SNr. Specifically, the team first engineered several AAV capsid mutants, with the AAV8 mutant, AAV8R, showing improved retrograde infection of D1-MSNs. Subsequent modifications led to the identification of AAV8R12 as the most efficient mutant for labeling D1-MSNs. Next, the authors analyzed a gene expression database and screened for promoters. Through extensive in vivo experimentation, the authors ascertained that the G88 promoter family drove the highest level of gene expression in MSNs. Consequently, by integrating the G88P3/G88P7 promoter with the AAV8R12vector, they obtained a robust manipulation tool capable of labeling D1-MSNs with strong specificity in primates.Next, to modulate the functions of the labeled D1-MSNs, the authors expressed Designer Receptors Exclusively Activated by Designer Drugs (DREADD) effector rM3Ds into D1-MSNs by unilaterally injecting the viral vector AAV8R12-G88P7-rM3Ds -2A -EYFP into the SNr of monkeys. Following the administration of clozapine N-oxide (CNO) and deschloroclozapine (DCZ), ligands that bind with rM3Ds to enable neuronal excitation (Roth, 2016), the monkeys showed marked increases in contraversive rotations, thus demonstrating the efficiency of the toolkit in direct pathway activation.Finally, the same approach was applied to MPP +-treated monkeys, which exhibited PD-like symptoms, including tremor,bradykinesia, and rigidity. Following a single surgical procedure to inject the virus into the SNr, the monkeys receiving regular CNO/DCZ treatments showed rapid recovery and restored motor ability, including increased spontaneous movement, reduced tremor, and improved motor skills.Continuous monitoring of these subjects confirmed the long-term safety of the treatment. Notably, when compared to the standard therapeutic dose of levodopa, the most widely used treatment for PD, this circuit-specific gene therapy not only showed a more rapid reversal of symptoms but also no inducement of observable side effects.Chen et al. (2023) not only established a proof-of-concept for circuit-specific therapeutics, but also effectively leveraged a non-human primate (NHP) model to fully showcase theReceived: 07 November 2023; Accepted: 15 November 2023; Online: 17November 2023Foundation items: This work was supported by the National Natural Science Foundation of China (32160204), Major Science and Technology Projects of Hainan Province (ZDKJ2021032), and STI 2030—Major Projects (2022ZD0208602)This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium,provided the original work is properly cited.Copyright ©2023 Editorial Office of Zoological Research, Kunming Institute of Zoology, Chinese Academy of SciencesWang et al. Zool. Res. 2023, 44(6): 1152−1153https:///10.24272/j.issn.2095-8137.2023.353effectiveness and safety of the therapy in PD monkeys. Given the natural occurrence of parkinsonian conditions in monkeys (Li et al., 2021a, 2021b), indicating shared mechanisms and pathologies of PD between NHPs and humans, this approach holds promise for successful clinical translation and application. In contrast, numerous proposed therapeutics have claimed efficacy in alleviating PD symptoms in mice. However, the significant physiological differences between mice and humans, coupled with the fact that mice do not naturally develop PD, have resulted in the failure of many of these mouse-based trials in the end. In this context, Chen et al. (2023) have laid a new foundation for translating cutting-edge biotechnology into feasible pre-clinical practice. Furthermore, recent reports have highlighted various new therapeutic approaches for PD, with several advancing to stages of clinical trial validation. For example, Bayer recently announced positive Phase-I results for its stem cell-based therapy bemdaneprocel (BRT-DA01) for PD, encouraging progression to the next phase of clinical testing. Concurrently, several companies have been developing immunotherapies targeting α-synuclein. Among these, prasinezumab (PRX002), developed by Prothena and Roche, did not achieve the expected outcomes in its Phase-II trials. Nevertheless, PRX002 demonstrated potential signs of disease progression mitigation, such that the companies have resolved to continue a Phase-IIb trial to further validate its efficacy. The ongoing development of novel therapies underscores the complexity of translating basic findings into clinical practice, often presenting more challenges than expected.Given the success of primate PD models, circuit-specific gene therapy shows a promising future in clinical application. Although AAV-mediated therapies are considered safe and sustainable over a long period of time (Kang et al., 2023), challenges remain in terms of potential immune reactions and unknown long-term effects of chemogenetic manipulation. The cost of medication is another concern for stem cell therapies (Chen & Niu, 2019) and immunotherapies. Currently, available immunotherapies (for other diseases) are expensive, hindering expansion of the market. Regarding the therapy proposed by Chen et al. (2023), the market price is uncertain, but it is hoped that it will be affordable for all patients. Although many factors need to be considered before potential clinical trials, we are enthusiastic about the progress made by the team and hope that their therapy opens the door for a new era in PD PETING INTERESTSThe authors declare that they have no competing interests.AUTHORS’ CONTRIBUTIONSY.Q.W., M.Y., and Z.S.G. conceived and wrote the draft. Y.Q.W. generated the figure. All authors read and approved the final version of the manuscript.Yue-Qi Wang1,2,3, Ming Yin1,2,*, Zhe-Shan Guo1,2,*1 State Key Laboratory of Digital Medical Engineering, School ofBiomedical Engineering, Hainan University, Haikou, Hainan570228, China2 Key Laboratory of Biomedical Engineering of Hainan Province, One Health Institute, Hainan University, Haikou, Hainan 570228,China3 Shenzhen Technological Research Center for PrimateTranslational Medicine, Shenzhen-Hong Kong Institute of Brain Science, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong 518055 China *Corresponding authors, E-mail: ********************.cn;**********************.cnREFERENCESBloem BR, Okun MS, Klein C. 2021. Parkinson's disease. The Lancet, 397(10291): 2284−2303.Chen YF, Hong ZX, Wang JY, et al. 2023. Circuit-specific gene therapy reverses core symptoms in a primate Parkinson’s disease model. Cell,doi: 10.1016/j.cell.2023.10.004.Chen ZZ, Niu YY. 2019. Stem cell therapy for Parkinson's disease using non-human primate models. Zoological Research, 40(5): 349−357.Kang L, Jin SL, Wang JY, et al. 2023. AAV vectors applied to the treatment of CNS disorders: clinical status and challenges. Journal of Controlled Release, 355: 458−473.Li H, Su LY, Yang LX, et al. 2021a. A cynomolgus monkey with naturally occurring Parkinson's disease. National Science Review, 8(3): nwaa292.Li H, Yao YG, Hu XT. 2021b. Biological implications and limitations of a cynomolgus monkey with naturally occurring Parkinson's disease. Zoological Research, 42(2): 138−140.Roth BL. 2016. DREADDs for neuroscientists. Neuron, 89(4): 683−694. Volkmann J, Daniels C, Witt K. 2010. Neuropsychiatric effects of subthalamic neurostimulation in Parkinson disease. Nature Reviews Neurology, 6(9): 487−498.Wang R, Shih LC. 2023. Parkinson's disease - current treatment. Current Opinion in Neurology, 36(4): 302−308.Figure 1 Circuit-specific gene therapy opens the door for a new era of Parkinson’s disease (PD) therapeuticsZoological Research 44(6): 1152−1153, 2023 1153。

阿特莫斯 测漏算法

阿特莫斯 测漏算法

阿特莫斯测漏算法阿特莫斯(Atemos)测漏算法是一种用于检测软件中存在的缺陷和漏洞的算法。

它的主要目标是通过自动化的方式发现软件中潜在的安全风险,并提供相关的修复建议。

该算法通过追踪和分析源代码、配置文件以及应用程序的其他组成部分来实现检测。

阿特莫斯测漏算法的核心原理是基于模式匹配和静态代码分析。

它使用预定义的模式来识别潜在的安全漏洞,如未经身份验证的访问、缓冲区溢出、拒绝服务攻击等。

通过对软件源代码中存在的模式进行分析和匹配,阿特莫斯可以快速而准确地确定软件中可能存在的漏洞。

该算法的另一个重要特点是它可以根据实际情况和需求进行定制化配置。

用户可以根据自己的应用程序和系统架构来定义特定的规则和检测模式。

这样一来,阿特莫斯可以更好地适应不同的开发环境和应用场景,并提供更加准确的检测结果。

阿特莫斯测漏算法的工作流程如下:1.配置和初始化:用户首先需要为阿特莫斯算法进行配置,包括指定要分析的源代码和其他相关文件的路径,定义规则和模式等。

然后,算法会根据用户的配置进行初始化。

2.代码分析:阿特莫斯会对指定的源代码进行静态分析,识别其中的安全漏洞模式。

它可以识别一些通用和常见的漏洞模式,也可以根据用户的配置来寻找特定的漏洞模式。

3.模式匹配:在代码分析的基础上,阿特莫斯会对找到的漏洞模式进行模式匹配。

它会比对事先定义好的模式库,以确定潜在的安全风险。

4.结果输出:阿特莫斯会输出检测结果。

用户可以通过查看输出报告来了解代码中存在的漏洞和缺陷,并获得相应的修复建议。

阿特莫斯测漏算法的优势在于它可以快速准确地检测潜在的安全漏洞。

相比于传统的手工检测方法,阿特莫斯可以大大节省时间和人力资源。

同时,它的定制化配置功能也使得算法更加灵活和适用于不同的开发环境和应用场景。

然而,阿特莫斯也存在一些局限性。

首先,它无法发现所有的安全漏洞。

对于一些高级的漏洞和零日漏洞,阿特莫斯可能无法进行准确检测。

其次,它需要依赖正确配置的规则和模式库。

magdb用法-概述说明以及解释

magdb用法-概述说明以及解释

magdb用法-概述说明以及解释1.引言在编写1.1 概述部分的内容时,可以从以下几个方面进行叙述。

首先,可以简要介绍magdb是什么。

magdb是一种数据库管理工具,旨在提供高效、稳定、可靠的数据存储和查询功能。

它使用了先进的数据库技术,能够满足用户对于数据存储和处理的各种需求。

其次,可以谈一谈magdb的背景和起源。

magdb的诞生离不开互联网和大数据时代的发展需求。

在海量数据和复杂数据库管理的情景下,很多传统的数据库管理工具已无法满足需求。

基于此,magdb应运而生,致力于解决这些问题,让数据处理变得更加简单高效。

接着,可以提及magdb的特点和优势。

magdb在设计上注重了可扩展性和性能优化,能够支持高并发和快速的数据读写操作。

同时,magdb 还提供了丰富的数据查询和分析功能,可以快速准确地提取所需信息。

此外,magdb还兼具简单易用和灵活可配的特点,使得用户能够轻松上手和个性化配置。

最后,可以简要介绍本文的整体结构和内容安排。

本文将围绕magdb 的基本概念、使用场景和主要功能展开论述。

具体来说,我们将在第2部分详细介绍magdb的基本概念,包括其架构、数据模型等方面;然后,在第3部分探讨magdb的使用场景,包括企业应用、数据分析等方面;最后,在第4部分总结magdb的优势和未来发展前景。

通过这样的概述,读者能够初步了解magdb的基本情况,为后续的内容展开打下基础。

1.2 文章结构文章结构部分的内容可以如下所述:文章结构部分旨在向读者介绍本篇文章的组织架构和章节内容,帮助读者理解整篇长文的脉络和重点。

本文按照以下几个章节展开:1. 引言:通过引言部分,我们将首先对magdb进行介绍。

在这一部分,我们将概述magdb的基本概念、文章的结构和编写这篇长文的目的。

2. 正文:正文是本篇长文的重点和核心部分。

在这一章节中,我们将详细介绍magdb的基本概念、使用场景和主要功能。

通过对magdb的解释和举例,读者将更好地了解magdb的优势和应用范围。

基于网络药理学分析冬虫夏草防治急性肾损伤的分子机制

基于网络药理学分析冬虫夏草防治急性肾损伤的分子机制

基于网络药理学分析冬虫夏草防治急性肾损伤的分子机制①洪涛李晓宇②李尚妹②刘华锋②③(广东医科大学附属医院肾内科,湛江 524000)中图分类号R285.5 文献标志码 A 文章编号1000-484X(2023)11-2299-06[摘要]目的:基于网络药理学分析冬虫夏草(CS)防治急性肾损伤(AKI)的分子作用机制。

方法:应用中药系统药理学数据库(TCMSP)筛选CS的有效成分和作用靶点,从DisGeNET、GeneCards、OMIM、TTD数据库筛选AKI的疾病靶点,运用Cytoscape 3.8.0软件构建“药物-成分-疾病-靶点”可视化调控网络,采用String在线数据库构建CS与AKI共同靶点的蛋白互作网络,DAVID数据库和KEGG数据库对共同靶点进行GO功能富集分析和KEGG通路富集分析,探讨其潜在分子机制。

结果:CS中筛选得到有效成分9种,防治AKI的作用靶点63个。

GO功能富集分析主要包括对药物的反应、信号转导、衰老、细胞增殖调控、细胞凋亡调控等。

CS防治AKI的主要富集通路有PI3K-Akt信号通路、MAPK信号通路、细胞凋亡通路、TNF信号通路、P53信号通路等。

结论:通过网络药理学研究方法预测了CS防治AKI的有效活性成分及作用靶点,并通过PPI网络和KEGG富集分析推测了CS通过多条信号通路调节防治AKI,涉及细胞自噬、凋亡及炎症反应等多环节生物学过程。

[关键词]冬虫夏草;急性肾损伤;网络药理学;分子机制Network pharmacology-based identification of key mechanism of Cordyceps sinensis' protection from acute kidney injuryHONG Tao, LI Xiaoyu, LI Shangmei, LIU Huafeng. Department of Nephrology, Affiliated Hospital of Guangdong Medical University, Zhanjiang 524000, China[Abstract]Objective:To explore potential key mechanism of Cordyceps sinensis´ (CS) protection from acute kidney injury (AKI) through network pharmacological analysis. Methods:All bioactive ingredients and target of CS were obtained from TCMSP data‐base. Targets related to AKI were obtained from DisGeNET, GeneCards, OMIM, TTD databases. Cytoscape 3.8.0 software was used to visualize "Medicine-Component-Disease-Target" networks. String online database was used to construct PPI network of common target between CS and AKI. GO functional enrichment analysis and KEGG pathway enrichment analysis were performed for common target in DAVID database and KEGG database to explore its potential molecular mechanism. Results:A total of 9 active ingredients and 63 potential targets in treatment of AKI have been identified. GO functional enrichment were mainly related to drug response, signal transduction, senescence, cell proliferation regulation, apoptosis regulation, etc. Pathways of CS to control AKI mainly enriched in PI3K-AKT signaling pathway, MAPK signaling pathway, apoptosis signaling pathway, TNF signaling pathway, P53 signaling path‐way,etc. Conclusion:Effective active ingredients and targets of CS for preventing AKI are predicted by network pharmacology. PPI network and KEGG enrichment analysis also speculates that CS regulates prevention and treatment of AKI through multiple signaling pathways, involving multiple biological processes such as autophagy, apoptosis and inflammatory response.[Key words]Cordyceps sinensis;Acute kidney injury;Network pharmacology;Molecular mechanism急性肾损伤(acute kidney injury,AKI)是多种原因造成的肾功能急性下降,是临床常见危重症。

使用电子药盒辅助肺结核患者服药管理的实施情况分析

使用电子药盒辅助肺结核患者服药管理的实施情况分析

•新技术•新方法•使用电子药盒辅助肺结核患者服药管理的实施情况分析王倪张慧张铁娟陈彬雷娟孙苗苗黄飞【摘要】分析2018年7月至2019年6月吉林省、浙江省和宁夏回族自治区全面推广电子药盒辅助肺结核患者治疗管理的实施情况。

研究期间3省(自治区)共登记活动性肺结核患者22 229例,其中14 659例患者使用了电子药盒,2018年第3季度电子药盒使用率为57. 9%(2138/3695),而2019年2季度达到78. 6%(4774/6071)。

在 患者的治疗过程中.电子药盒坚持使用率逐月下降,疗程2个月末为95.3%(13965/14 659),疗程6个月末为85. 0%( 12 454/14 659)。

使用电子药盒的患者中72. 5% (10 622/14 659)有服药记录,其中规则服药率为82.3%(8746/10622)。

本研究进一步证明了推广新型患者服药管理方式的可行性,对电子药盒在我国的进一步推广有较大参考价值。

【关键词】结核,肺;药物疗法;病例管理;结核与过程评价(卫生保健);电子健康记录;电子药盒Analysis of using electronic pilllK>\ to assist the medication management of pulmonary tulKTcuIosis patients WANG N i, ZH ANG H u i Z H A N G Tie-juan %CHEN B i n L E I Juan ^SU N Miao-miao *HUANG Fei. National Center Jor Tuberculosis Control mid Prevm tioii. Chinese Center for Disease Control and Preventum , Beijing 102206 , China Cimesfxmding author :HUANG Fei* E m ail:huangjei@chhmcdc.m【Abstract】We analyzed the implementation result of using electronic pillbox to assist the medication management for people with pulmonary tuberculosis (PTB) in Jilin, Zhejiang and Ningxia among July 2018 to March 2019. Of 22 229 patients. 14 657 used electronic pillbox* the rate of electronic pillbox using in the third quarter of 2018 was 57. 9%(2138/3695)^ but 78.9%(4774/6071 ) in the second quarter of 2019. During the treatm ent process, the uptake rate of pillbox decreased by m onth. 95.3%( 13 965/14 659) at the end of second m onth and85.0%(12 454/14 659) at the end of six month. 72.5%( 10 622/14 659) of the patients using pillbox hadadherence medication records, of which the adherence medication rate was 82. 3%(8746/10 622). The results of this study further proved the feasibility for implementing the new method of patient m anagem ent, and provide im plementation experience for the further scale up of electronic pillbox in China.【Key words】丁uberculosis,pulm onary; Drug therapy;Case m anagem ent;outcome assessm ent (healthc a re); Electronic health records;Medicine m onitor2018年世界卫生组织古算全球新发结核病开放科学(资源服务)标识码(OSID)的开放科学计划以二维码为入口.提供丰富的线上扩展功能•包括作者对论文背景的语音介绍、该研究的附加说明、与读者的交互问答、拓展学术圈等。

dynamodb 查询语法

dynamodb 查询语法

dynamodb 查询语法摘要:1.DynamoDB 简介2.DynamoDB 的数据模型3.DynamoDB 的查询方式a.按键查询b.范围查询c.过滤条件查询d.排序和分页查询4.DynamoDB 的聚合查询a.聚合函数b.聚合键c.投影和选择5.DynamoDB 的查询示例正文:Amazon DynamoDB 是一款完全托管的NoSQL 数据库服务,它可以提供快速的、可扩展的和可靠的性能。

DynamoDB 使用键值对(Key-Value)数据模型,用户可以通过键(Key)快速查询和获取数据。

在DynamoDB 中,查询数据主要有以下几种方式:1.按键查询:通过提供键(Key)来查询对应的数据。

这是最基本的查询方式,简单且高效。

2.范围查询:通过提供键(Key)的范围来查询满足条件的数据。

这种查询方式适用于需要查找一定范围内的数据的情况。

3.过滤条件查询:通过提供过滤条件来查询满足条件的数据。

这种查询方式可以结合键(Key)和条件来更精确地查找数据。

4.排序和分页查询:通过提供排序键(Sort Key)和分页参数来查询排序后的数据。

这种查询方式适用于需要按照特定顺序查看数据的情况。

除了基本的查询方式,DynamoDB 还提供了聚合查询功能,可以对数据进行进一步的处理和分析。

1.聚合函数:DynamoDB 提供了多种聚合函数,如求和(Sum)、平均值(Avg)、最大值(Max)和最小值(Min)等。

通过使用聚合函数,用户可以快速计算和汇总数据。

2.聚合键:在聚合查询中,用户需要指定一个或多个聚合键(Aggregate Key),用于对数据进行分组和汇总。

3.投影和选择:通过设置投影(Project)和选择(Select)参数,用户可以控制返回结果中包含哪些字段。

这有助于减少数据传输量和提高查询性能。

数据库性能监控和优化的工具介绍

数据库性能监控和优化的工具介绍

数据库性能监控和优化的工具介绍数据库性能监控是确保业务系统正常运行的重要环节之一。

合理使用监控工具能够提高数据库的运行效率和稳定性,对于保障数据的安全性和维护用户体验都起到重要的作用。

本文将介绍几款常用的数据库性能监控和优化工具,包括Percona Monitoring and Management (PMM)、Datadog、Nagios和MySQL Enterprise Monitor。

Percona Monitoring and Management (PMM)是一款开源的数据库性能监控和管理工具。

它可以监控多种数据库系统,包括MySQL、MariaDB、Percona Server等。

PMM提供了丰富的监控数据、实时警报和可视化界面,使得管理员可以更直观地了解数据库运行状况。

PMM还提供了数据库性能检测工具,可通过运行诸如查询分析器、Index Analysis等功能来优化数据库性能。

Datadog是一款著名而强大的云基础设施监控工具。

它可以监控各种数据库,不仅包括MySQL、MariaDB和PostgreSQL等关系型数据库,还可以监控MongoDB和Redis等非关系型数据库。

Datadog提供了丰富的监控指标和仪表盘,可帮助管理员实时监测数据库的性能和负载。

此外,Datadog还支持自定义警报和集成其他监控工具,如Grafana等。

Nagios是一个强大和灵活的开源监控系统,可以监控服务器、网络和各种服务,包括数据库。

通过使用Nagios的插件,管理员可以定制化监控数据库的性能指标和状态。

Nagios提供了丰富的报告和告警功能,可以通过邮件、短信等方式通知管理员,以及可视化平台展示监控结果。

此外,Nagios还支持自动化运维操作,如重新启动服务、数据库备份等。

MySQL Enterprise Monitor是一个由MySQL官方提供的数据库性能监控和优化工具。

它主要面向MySQL数据库,提供了强大的监控和管理功能。

dynamodb 查询语法

dynamodb 查询语法

dynamodb 查询语法【实用版】目录1.引言2.DynamoDB 的基本概念3.DynamoDB 的查询语法4.查询示例5.结论正文【引言】在现代应用开发中,NoSQL 数据库越来越受到欢迎,其中 Amazon DynamoDB 是亚马逊公司开发的一种高性能、可扩展、全托管的 NoSQL 数据库服务。

本篇文章将介绍 DynamoDB 的查询语法。

【DynamoDB 的基本概念】DynamoDB 主要有三个核心组件:表(Table)、项(Item)和键(Key)。

表是存储数据的基本单元,项是表中的行,键是表中的列。

在 DynamoDB 中,数据以键值对的形式存储,每个表都有一个唯一的主键。

【DynamoDB 的查询语法】DynamoDB 的查询语法主要包括以下几种:1.选择(Select):用于查询表中的数据。

2.从(From):指定要查询的表。

3.全部(All):表示查询所有列,或者使用*代替。

4.条件(Where):用于指定查询条件,可以根据键或属性值进行筛选。

5.排序(Sort):用于对查询结果进行排序。

6.限制(Limit):用于限制查询结果的数量。

【查询示例】假设有一个名为“students”的表,主键为“id”,包含以下属性:id, name, age, gender。

现在要查询年龄大于等于 18 的所有学生的信息,并按照年龄进行升序排序,查询结果数量不超过 10。

可以使用如下查询语句:```SELECT * FROM students WHERE age >= 18 ORDER BY age ASC LIMIT 10```【结论】本篇文章介绍了 DynamoDB 的基本概念以及查询语法,通过实例演示了如何进行查询操作。

kmer建树方法

kmer建树方法

Kmer是从测序数据中滑窗提取出的长度为k的寡聚核苷酸序列,可以评估基因组大小、杂合度、重复序列比例等。

在测序reads均匀分布的前提下,可以使用总kmer数和平均kmer深度来估算基因组长度。

建树方法通常指的是使用某种算法或技术来构建一棵反映数据之间关系的树状结构。

然而,Kmer本身并不直接用于建树,而是用于基因组特征分析和序列拼接等任务。

在基因组学研究中,可能会使用Kmer频率或其他相关统计数据来辅助建树,但这并不是Kmer的主要用途。

关于如何使用Kmer进行基因组特征分析和序列拼接等任务,以下是一些常见的方法:
1.基因组特征分析:通过统计不同Kmer的出现频率,可以推断出基因组的大小、重复序列比例和
杂合度等信息。

例如,基因组大小可以通过总Kmer数和平均Kmer深度来计算。

2.序列拼接:Kmer可以用于序列拼接,特别是在De Bruijn Graph拼接算法中。

由同一段read
得到的Kmer可以完全拼接起来,相邻两个Kmer之间的overlap碱基数为(k-1)。

这种方法可以节省内存和计算时间。

请注意,具体的建树方法需要根据研究目的和数据类型来选择。

如果你需要更详细的指导或示例代码,请提供更多关于你的研究背景和具体需求的信息。

利用VBA查找核酸数据库DNA保守序列

利用VBA查找核酸数据库DNA保守序列

利用VBA查找核酸数据库DNA保守序列詹少华;尹艺林;蔡永萍;樊洪泓;林毅【摘要】The four VBA ( visual basic for application) programs were written for searching conservative sequences in nuclear acid database. The programs included importing - DNA - sequence, sorting - DNA - sequence, DNA -random - sequence and finding - DNA - conservative - sequence. The DNA sequences saved as fasta format in text file could be imported into column A of Excel Sheetl by the program of importing - DNA - sequence, at same time, the Gi numbers were reserved and the redundant notes were deleted. Then, the Gi numbers were sorted into column A and corresponding DNA integrate sequences were arranged into column B by the program of sorting - DNA - sequence. DNA random sequences could be made by the program of DNA - random - sequence. The program of finding - DNA - conservative - sequence could help us searching conservative sequences in DNA databases by alignment with the DNA random sequences. As an example of the programs application, the conservative sequences of soybean genome survey sequences were searched. The programs were the supplementary tools of prevalent sequence alignment software, could contribute to design PCR primers, to analyze the genes function, and to identify breeding resource.%采用VBA 编写了查找核酸数据库保守序列的四个相关程序,“导入DNA序列”程序可以将Fasta格式的DNA序列文本文件存放到Excel Sheetl的A列中,保留每个序列的Gi号,删除多余的注释部分;“整理DNA序列”程序可以将DNA序列Gi号存放到A列中,B列为对应Gi号的完整序列;“DNA随机序列”程序可以产生DNA随机序列;“发现DNA保守序列”程序可以将随机序列与下载的DNA序列比对,查找每一种随机序列的出现频率.以大豆基因组序列为实例,说明了这些程序的应用方法.该程序弥补了流行序列比对软件的不足,为PCR设计引物、分析基因功能以及种质资源鉴定等方面提供新的工具.【期刊名称】《生物信息学》【年(卷),期】2011(009)004【总页数】4页(P299-302)【关键词】VBA;序列比对;保守序列;核酸数据库;大豆【作者】詹少华;尹艺林;蔡永萍;樊洪泓;林毅【作者单位】皖西学院生物与制药工程学院,六安237012;皖西学院生物与制药工程学院,六安237012;安徽农业大学生命科学学院,合肥230036;安徽农业大学生命科学学院,合肥230036;安徽农业大学生命科学学院,合肥230036【正文语种】中文【中图分类】Q518.2序列比对是分子生物学中重要的分析方法,可用于探测新序列与已知序列的同源性,分析物种之间的亲缘关系[1],可以在此基础上设计引物进行PCR扩增、预测新序列高级结构、功能和基因电子克隆。

dynamodb 查询语法

dynamodb 查询语法

dynamodb 查询语法摘要:一、DynamoDB 简介1.亚马逊DynamoDB 简介2.数据模型与存储3.键值对与集合二、DynamoDB 查询语法1.查询请求的结构2.请求方法与路径3.查询条件的编写三、常见查询操作1.获取单个item2.获取多个item3.按照键值对查询4.按照条件过滤查询四、示例与实践1.示例一:获取单个item2.示例二:获取多个item3.示例三:按照键值对查询4.示例四:按照条件过滤查询正文:DynamoDB 是亚马逊提供的一项NoSQL 数据库服务,它为用户提供了一个高度可扩展、低延迟、高吞吐量的数据存储解决方案。

在DynamoDB 中,数据以键值对(Key-Value)的形式存储,也可以将一组键值对组成一个集合(Set)。

要进行查询操作,首先需要了解DynamoDB 的查询语法。

查询请求主要包括以下几个部分:请求方法、路径、查询条件以及排序和筛选选项。

其中,请求方法和路径用于指定要访问的表和集合,查询条件则用于筛选和定位特定的数据。

在DynamoDB 中,有几种常见的查询操作,包括获取单个item、获取多个item、按照键值对查询以及按照条件过滤查询。

下面将通过示例来说明这些操作的具体用法。

示例一:获取单个item假设我们有一个名为"users"的表,其中有一个名为"user_id"的键,我们要获取该键对应的值。

可以使用以下查询请求:```GET /users/user_id```示例二:获取多个item如果我们想要获取多个item,可以使用"Items"参数。

例如,要获取"users"表中所有用户的详细信息,可以使用以下请求:```GET /users```示例三:按照键值对查询有时,我们需要根据某个键值对来查询数据。

例如,在"users"表中,我们想要获取所有年龄大于30 的用户。

IDEAM Daily Climatological Data Manipulation和可视化工具

IDEAM Daily Climatological Data Manipulation和可视化工具

Package‘ideamdb’October13,2022Type PackageTitle Easy Manipulation of IDEAM's Climatological DataVersion0.0.9Description Time series plain text conversion and data visualization.It allowsto transform IDEAM(Instituto de Hidrologia,Meteorologia y Estudios Ambientales)daily series from plain text to CSVfiles or data frames in R.Additionally,it is possible to obtain exploratory graphs from times series.IDEAM’s datais freely delivered under formal request through the official web page<.co/solicitud-de-informacion>.License GPL(>=2)Depends R(>=2.10)Encoding UTF-8LazyData trueRoxygenNote6.1.1Imports stringr,tidyr,dplyr,ggplot2,utils,graphicsSuggests knitr,rmarkdownVignetteBuilder knitrNeedsCompilation noAuthor Luz Maria Morales[aut,cre],Edwin Echeverri[aut],Kenneth Roy Cabrera[aut]Maintainer Luz Maria Morales<*********************.co>Repository CRANDate/Publication2019-03-2419:10:06UTCR topics documented:Example_IDEAM (2)IdeamLong (2)IdeamWide (3)TimeSeries (4)12IdeamLong Index5 Example_IDEAM A dataset withfictitious values of no real IDEAM’s Stations.The textfile keeps IDEAM’s text format.DescriptionA dataset withfictitious values of no real IDEAM’s Stations.The textfile keeps IDEAM’s textformat.Usagedata(Example_IDEAM)FormattextfileSourceIt is a self-madefile.Original data could be freely required through IDEAM’s web page.http: //.co/solicitud-de-informacionExamplesdata(Example_IDEAM)IdeamLong Create a day by day IDEAM’s data serieDescriptionCreate a data frame with one value by row.The df is available to export as a CSVfileUsageIdeamLong(file,write=FALSE,outfile="MatrizIdeamLarga")Argumentsfile IDEAMfile path orfile name if it is on the working directorywrite If True a CSVfile is returned to the working directory,otherwise only a data frame is shownoutfile Outfile name that will be saved on the working directoryIdeamWide3 Valuedataframe or a CSVfileExamples#Retreive example datasetExample_IDEAM<-system.file("extdata","Example_IDEAM",package="ideamdb")#Create a temporal fileexample.ideam.long<-tempfile()write.csv(IdeamLong(Example_IDEAM),file=example.ideam.long)read.csv(example.ideam.long)IdeamWide Create a matrix with IDEAM’s dataDescriptionCreate a data frame that it is available to export as a CSVfileUsageIdeamWide(file,write=FALSE,outfile="MatrizIdeamAncha")Argumentsfile IDEAMfile path orfile name if it is on the working directorywrite If True a CSVfile is returned to the working directory,otherwise only a data frame is shownoutfile Outfile name that will be saved on the working directoryValuea data frame or a CSVfileExamples#Retreive example datasetExample_IDEAM<-system.file("extdata","Example_IDEAM",package="ideamdb")#Create a temporal fileexample.ideam.wide<-tempfile()write.csv(IdeamWide(Example_IDEAM),file=example.ideam.wide)read.csv(example.ideam.wide)4TimeSeries TimeSeries Graphical exploratory chartsDescriptionCreate a time series chart and a boxplot of every data sampleUsageTimeSeries(file,station="all",variable="all")Argumentsfile IDEAMfile path orfile name if it is on the working directorystation a single station name or type"all"or"todas"to plot everythingvariable a single variable name or type"all"or"todas"to plot everything only a data frame is shownValuetime series plot and boxplot for every variable data and stationExamplesExample_IDEAM<-system.file("extdata","Example_IDEAM",package="ideamdb")TimeSeries(Example_IDEAM,station="LUCERO")#Print time series chart and boxplots for all variables#collected in an specific stationIndex∗datasetsExample_IDEAM,2Example_IDEAM,2IdeamLong,2IdeamWide,3TimeSeries,45。

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KMeyeDB:Keio Mutation Database for Eye Disease Genes Constructed on a Graphical Distributed DatabaseSystem MutationV iewShinsei Minoshima Susumu Mitsuyama Saho Ohnomino@dmb.med.keio.ac.jp mituyama@dmb.med.keio.ac.jp saho@dmb.med.keio.ac.jpTakashi Kawamura Nobuyoshi Shimizukawamura@dmb.med.keio.ac.jp shimizu@dmb.med.keio.ac.jpDepartment of Molecular Biology,Keio University School of Medicine35Shinanomachi,Shinjuku-ku,Tokyo,160-8582Japan.More than4,300human diseases have been identified to be inheritable.To date,∼1,400disease loci have been mapped to particular chromosomal regions and almost800disease-causing genes and the associated mutations have been identified.These mutation data are indispensable not only for basic study of gene functions but also for clinical medicine including DNA diagnosis and gene therapy. We have been collecting mutation data of various diseases.Here,we report KMeyeDB,a mutation database of human eye disease genes[1].KMeyeDB has been constructed on a database software MutationView[2]which provides graphical data presentation and analysis as a smooth user-interface. At present,KMeyeDB covers mutation data of16different genes(RHO,RDS,PDE6A,PDE6B, ROM1,CNCG1,RP3,ABCR,RHOK,RB1,RS1,GSN,TGFBI,MYOC,CYP1B1,and CHM)for18 eye diseases including retinitis pigmentosa,glaucoma,corneal dystrophy,choroideremia and others. The database software MutationView has the following features:(i)Chromosome ideograms are displayed to list diseases in the mapped regions.(ii)Human body is schematically shown to list diseases on the particular organ and/or tissues. (iii)OMIM,GDB and HGMD information can be retrieved for each disease with hyperlink.(iv)For the gene selected,the genomic and cDNA structures are graphically shown and various mutations are located on appropriate positions(Fig.1D).Frequency and case number for each mutation are shown as a histogram.Other information such as mutation types,clinical symp-toms,age of onset,or inheritance pattern is accompanied with individual mutation and can be used to classify the cases(Fig.1A).PCR primer information to amplify various regions of the gene is also shown(Fig.1B and D).(v)Zoom-in allows to display the nucleotide sequence on which exact mutation is indicated and change of the restriction sites due to mutation is analyzed(Fig.1C).(vi)Entry of new mutation data is readily performed and analyzed with existing data,but modifi-cation of the data is permitted only to the qualified curator of each disease gene.(vii)Since any data on WWW site with the same defined format can be made accessible,Mutation-View will be able to coordinate many existing locus-specific mutation databases as a distributed database.The KMeyeDB is accessible via http://www.dmb.med.keio.ac.jp with user ID and password,which are issued after application through the same URL.The software MutationView is made available to the founders and qualified curators of locus-specific mutation databases on a collaborative basis to establish a world-wide distributed database system for disease gene mutations.The KMeyeDB and MutationView will be demonstrated at the meeting.Figure1:Various windows of KMeyeDB constructed on MutationView.Here,mutation data of the myocilin gene(MYOC)causing a type of glaucoma are shown.A.Classify window:One of4items, Mutation Frequency,Mutation Type,Median Age at Diagnosis and Ethnic Origin,can be used to classify data by clicking corresponding buttons.B.PCR detail window:Primer sequences and reaction condition are shown.C:Mutation detail window:Sequences of normal and mutation alleles are shown with restriction sites.D:Gene structure window:Classified mutations by Ethnic Origin are shown with PCR primers.AcknowledgementsThis work has been carried out in collaboration with Chi Co.,Ltd.This work was supported in part by a Grant-in-Aid for Scientific Research on Priority Areas from the Ministry of Education,Science, Sports and Culture of Japan and a fund for the“Research for the Future”Program from the Japan Society for the Promotion of Science(JSPS).References[1]Minoshima,S.,Mitsuyama,S.,Ohno,S.,Kawamura,T.and Shimizu,N.,Keio MutationDatabase for Eye Disease Genes(KMeyeDB),Nucleic Acids Res.,in press.[2]Minoshima,S.,Mitsuyama,S.,Ohno,S.,Kawamura,T.and Shimizu,N.,MutationView:ADistributed Database for Human Disease Gene Mutations,Genome Informatics1997,UniversalAcademy Press,244–245,1997.。

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